PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.001G197500.2
Common NameB456_001G197500, LOC105800414
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 329aa    MW: 36424.8 Da    PI: 5.2639
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.001G197500.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH573.4e-183786255
                        HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH  2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                        r +h+e E+rRR++iN++f++Lr+++P++    ++K +Ka+ L +++eYI+ Lq
  Gorai.001G197500.2 37 RSKHSETEQRRRSKINERFQTLRDIIPQN----DQKRDKASFLLEVIEYIQFLQ 86
                        899*************************9....9*******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.108.8E-2432106IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.5113585IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.39E-173590No hitNo description
SuperFamilySSF474591.09E-1935112IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.9E-163786IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.1E-134191IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MVKSVASAQL HQEEEDDDGE TVKVEGKGSE QKANSNRSKH SETEQRRRSK INERFQTLRD  60
IIPQNDQKRD KASFLLEVIE YIQFLQEKLQ IYEGSYQGWS QEATKLIPWR NHRGLAESFI  120
DHSQIMNNGS NCENDGVIPS MVANAQNSID SDLGDAAVFK TPDHPPVSAT STVSMQTQSN  180
TIATHGRGSI TFHESASDSE NMVHQPQFQS WQSRDCLSES AVVNNSAIAR EDLTIRDESV  240
DLSSAYSQGI RNSLTQVLQS SGVDISQASI SVKIDVGKRV AAGMTSTPSS SKEKDIQYTS  300
NQEMAQTGVR SYTEESDQAY KRHRTGKS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012486994.10.0PREDICTED: transcription factor BIM3-like
TrEMBLA0A0D2Q1310.0A0A0D2Q131_G
STRINGPOPTR_0004s11180.11e-114(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69010.17e-61BES1-interacting Myc-like protein 2
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]